Basset: multi-task convolutional networks for predicting regions chromatin from sequence

Posted on February 15, 2016 in Papers

I've been reading a few papers recently that each involve training a deep network that takes input directly from sequence and predicts some aspect of chromatin. Deep Bind predicts protein-DNA binding, and DeepSEA predicts the effect of SNPs on chromatin state. The most recent paper, and the one I find …


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Blogging using Pelican

Posted on November 14, 2015 in Python

My first attempt at blogging using Pelican and github.io.